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All functions

Backward()
Propagate a backward table
CacheHaplotypes()
Load haplotypes into optimised package cache
CacheSummary() N() L()
Retrieve information about the haplotype cache
CalcRho()
Calculate recombination probabilities
ClearHaplotypeCache()
Remove all cached haplotypes and free memory
CopyTable()
Copy Forward/Backward tables
DistMat()
Distance matrix
Forward()
Propagate a forward table
MakeBackwardTable()
Create a kalisBackwardTable
MakeForwardTable()
Create a kalisForwardTable
Parameters()
Define a set of Li and Stephens parameters
PostProbs()
Posterior marginal probabilities
QueryCache()
Retrieve haplotypes from memory cache
ResetTable()
Reset Forward/Backward tables
SmallHaps SmallMap
Small example phased haplotype dataset and recombination map
WriteHaplotypes() ReadHaplotypes()
I/O for haplotype matrices in HDF5 files
plot(<kalisDistanceMatrix>)
Plotting function for a kalisDistanceMatrix object